If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ), 'gf_id' => 'HOM05D000936', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000936' ), 'data_identifier' => 'HOM05D000936', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000936', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12030' => 'bna', 'A01p21320' => 'bna', 'A02p24510' => 'bna', 'A03p37760' => 'bna', 'A03p52400' => 'bna', 'A05p10790' => 'bna', 'A05p36830' => 'bna', 'A07p09610' => 'bna', 'A09p35490' => 'bna', 'Aa31LG5G1810' => 'aar', 'Aa31LG6G12050' => 'aar', 'Aa31LG6G2730' => 'aar', 'Aa31sc115G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1171' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2842' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.365' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.734' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.138' => 'aag', 'Actinidia00855' => 'ach', 'Actinidia03634' => 'ach', 'Actinidia27605' => 'ach', 'Actinidia27606' => 'ach', 'Actinidia33637' => 'ach', 'Ah.02g110960' => 'amhyb', 'Ah.11g050610' => 'amhyb', 'Ah.11g050620' => 'amhyb', 'AL1G37700' => 'aly', 'AL1G44460' => 'aly', 'AL1G45000' => 'aly', 'AL1G64570' => 'aly', 'AL3G24340' => 'aly', 'AL4G30900' => 'aly', 'AL6G48680' => 'aly', 'AL6G51050' => 'aly', 'AL7G33580' => 'aly', 'Aqoxy1G01341' => 'aox', 'Aqoxy1G01342' => 'aox', 'Aqoxy2G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BN5HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UKE5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AJUG68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I039CZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX1GIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF646F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN983' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9CR7' => 'arhy', 'AT1G30820' => 'ath', 'AT1G54350' => 'ath', 'AT2G34890' => 'ath', 'AT3G12670' => 'ath', 'AT4G02120' => 'ath', 'AT4G20320' => 'ath', 'ATR0706G266' => 'atr', 'ATR0737G107' => 'atr', 'ATR1136G108' => 'atr', 'Atru.chr1.4' => 'acertr', 'Atru.chr1.5' => 'acertr', 'Atru.chr10.198' => 'acertr', 'Atru.chr5.1051' => 'acertr', 'AUR62011840' => 'cqu', 'AUR62020749' => 'cqu', 'AUR62024683' => 'cqu', 'AUR62027964' => 'cqu', 'AUR62028617' => 'cqu', 'AUR62032341' => 'cqu', 'BcaB02g09501' => 'bca', 'BcaB03g13814' => 'bca', 'BcaB04g21047' => 'bca', 'BcaB04g21455' => 'bca', 'BcaB05g23604' => 'bca', 'BcaB06g25525' => 'bca', 'BcaB07g32732' => 'bca', 'BcaB07g33040' => 'bca', 'BcaC01g04028' => 'bca', 'BcaC02g11572' => 'bca', 'BcaC03g16105' => 'bca', 'BcaC04g22061' => 'bca', 'BcaC05g27104' => 'bca', 'BcaC05g29249' => 'bca', 'BcaC06g30650' => 'bca', 'BcaC09g48254' => 'bca', 'BcaC09g50320' => 'bca', 'BcaNung03500' => 'bca', 'BcaNung03722' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00190' => 'bna', 'BolC1t01392H' => 'bol', 'BolC1t02608H' => 'bol', 'BolC1t05189H' => 'bol', 'BolC2t09891H' => 'bol', 'BolC3t16858H' => 'bol', 'BolC4t22978H' => 'bol', 'BolC5t31720H' => 'bol', 'BolC5t34193H' => 'bol', 'BolC7t41986H' => 'bol', 'BolC7t45584H' => 'bol', 'BraA01t01145Z' => 'bra', 'BraA01t02039Z' => 'bra', 'BraA01t04115Z' => 'bra', 'BraA02t07441Z' => 'bra', 'BraA03t12931Z' => 'bra', 'BraA03t14318Z' => 'bra', 'BraA05t20023Z' => 'bra', 'BraA05t22484Z' => 'bra', 'BraA07t28503Z' => 'bra', 'BraA07t28758Z' => 'bra', 'BraA09t39074Z' => 'bra', 'C01p14330' => 'bna', 'C01p26670' => 'bna', 'C01p52510' => 'bna', 'C02p38740' => 'bna', 'C03p45830' => 'bna', 'C04p13900' => 'bna', 'C05p29880' => 'bna', 'C05p55280' => 'bna', 'C07p14880' => 'bna', 'C07p50860' => 'bna', 'CAN.G67.4' => 'can', 'CAN.G69.4' => 'can', 'CAN.G809.8' => 'can', 'CANSAT11G1384' => 'cansat', 'CANSAT11G2276' => 'cansat', 'CANSAT25G0167' => 'cansat', 'CANSAT35G0889' => 'cansat', 'CANSAT56G3090' => 'cansat', 'CANSAT56G3622' => 'cansat', 'CANSAT64G2174' => 'cansat', 'CARHR030290' => 'chi', 'CARHR046020' => 'chi', 'CARHR046030' => 'chi', 'CARHR087180' => 'chi', 'CARHR129040' => 'chi', 'CARHR227140' => 'chi', 'CARHR250300' => 'chi', 'Carub.0001s2913' => 'cru', 'Carub.0001s4482' => 'cru', 'Carub.0003s1202' => 'cru', 'Carub.0004s1657' => 'cru', 'Carub.0006s3505' => 'cru', 'Carub.0007s2086' => 'cru', 'Ca_03313_v3' => 'car', 'Ca_03315_v3' => 'car', 'Ca_10300_v3' => 'car', 'Ca_22539_v3' => 'car', 'Ca_26790_v3' => 'car', 'CBR_g26492' => 'cbr', 'CBR_g26493' => 'cbr', 'CBR_g35022' => 'cbr', 'CBR_g39345' => 'cbr', 'CBR_g75716' => 'cbr', 'Cc00_g09060' => 'ccan', 'Cc08_g11820' => 'ccan', 'Cc09_g04460' => 'ccan', 'CDE04G1459' => 'cde', 'CDE10G0356' => 'cde', 'Cfa001173' => 'cfa', 'Cfa005840' => 'cfa', 'Cfa017781' => 'cfa', 'Cfa022182' => 'cfa', 'Cfa026967' => 'cfa', 'Ciclev10004357m.g' => 'ccl', 'Ciclev10004584m.g' => 'ccl', 'Ciclev10014658m.g' => 'ccl', 'Ciclev10031113m.g' => 'ccl', 'CiPaw.07G115000' => 'cil', 'CiPaw.08G091600' => 'cil', 'CiPaw.09G141500' => 'cil', 'CiPaw.10G108900' => 'cil', 'CiPaw.15G110000' => 'cil', 'CiPaw.16G078700' => 'cil', 'CiPaw.16G078800' => 'cil', 'ClCG01G025990' => 'cla', 'ClCG02G018890' => 'cla', 'ClCG07G009780' => 'cla', 'ClCG09G005260' => 'cla', 'ClCG09G022960' => 'cla', 'COL.COLO4_23264' => 'col', 'COL.COLO4_25010' => 'col', 'COL.COLO4_32277' => 'col', 'COL.COLO4_32280' => 'col', 'Cpa.g.c31283' => 'cpa', 'Cpa.g.c46978' => 'cpa', 'Cpa.g.sc118.11' => 'cpa', 'Cpa.g.sc118.17' => 'cpa', 'Cpa.g.sc118.20' => 'cpa', 'Cpa.g.sc18.5' => 'cpa', 'Cpa.g.sc30.54' => 'cpa', 'Cre01.g001350' => 'cre', 'Cre09.g406050' => 'cre', 'Cre10.g439000' => 'cre', 'CsaV3_6G013300' => 'csa', 'CsaV3_6G053210' => 'csa', 'CsaV3_7G023220' => 'csa', 'CsaV3_7G029810' => 'csa', 'CSS0005935' => 'camsi', 'CSS0019150' => 'camsi', 'CSS0023666' => 'camsi', 'CSS0026306' => 'camsi', 'CSS0041214' => 'camsi', 'CSS0044630' => 'camsi', 'DCAR_001250' => 'dca', 'DCAR_003729' => 'dca', 'DCAR_012362' => 'dca', 'DCAR_016855' => 'dca', 'DCAR_018310' => 'dca', 'Dinv05289' => 'din', 'Dinv10068' => 'din', 'Dinv42445' => 'din', 'Dinv42447' => 'din', 'Duzib132G0341' => 'dzi', 'Duzib133G0051' => 'dzi', 'Duzib187G0090' => 'dzi', 'Duzib211G0572' => 'dzi', 'Duzib213G0594' => 'dzi', 'Duzib251G0327' => 'dzi', 'ECA232G0034' => 'eca', 'ECA236G1665' => 'eca', 'ECA238G3622' => 'eca', 'ECA246G0960' => 'eca', 'ECA248G0514' => 'eca', 'EL10Ac2g03607' => 'bvu', 'EL10Ac3g06469' => 'bvu', 'EL10Ac4g08099' => 'bvu', 'EL10Ac5g10562' => 'bvu', 'EL10As5g23496' => 'bvu', 'Eucgr.E04334' => 'egr', 'Eucgr.F01480' => 'egr', 'Eucgr.F04488' => 'egr', 'Eucgr.K03526' => 'egr', 'FAN04G1046' => 'fan', 'FAN08G2437' => 'fan', 'FAN11G0860' => 'fan', 'FAN11G1021' => 'fan', 'FAN11G2725' => 'fan', 'FAN11G3810' => 'fan', 'FAN13G0566' => 'fan', 'FAN16G1826' => 'fan', 'FAN16G3244' => 'fan', 'FAN16G3413' => 'fan', 'FAN18G1287' => 'fan', 'FAN21G0554' => 'fan', 'FAN21G1952' => 'fan', 'FAN21G2803' => 'fan', 'FAN25G2273' => 'fan', 'FAN25G2286' => 'fan', 'FAN25G3358' => 'fan', 'FvH4_2g03371' => 'fve', 'FvH4_3g13530' => 'fve', 'FvH4_3g13560' => 'fve', 'FvH4_3g13561' => 'fve', 'FvH4_3g13563' => 'fve', 'FvH4_3g13622' => 'fve', 'FvH4_3g28912' => 'fve', 'FvH4_5g39590' => 'fve', 'FvH4_6g21841' => 'fve', 'FvH4_7g16732' => 'fve', 'Glyma.02G014200' => 'gma', 'Glyma.03G039318' => 'gma', 'Glyma.08G160900' => 'gma', 'Glyma.08G161000' => 'gma', 'Glyma.08G232600' => 'gma', 'Glyma.08G264800' => 'gma', 'Glyma.10G014900' => 'gma', 'Glyma.15G217500' => 'gma', 'Glyma.15G266600' => 'gma', 'Glyma.16G096500' => 'gma', 'Gohir.A01G023000' => 'ghi', 'Gohir.A01G100700' => 'ghi', 'Gohir.A08G041000' => 'ghi', 'Gohir.A11G111200' => 'ghi', 'Gohir.A12G051300' => 'ghi', 'Gohir.A13G127200' => 'ghi', 'Gohir.D01G021000' => 'ghi', 'Gohir.D01G085200' => 'ghi', 'Gohir.D01G160450' => 'ghi', 'Gohir.D02G155466' => 'ghi', 'Gohir.D02G155532' => 'ghi', 'Gohir.D03G073950' => 'ghi', 'Gohir.D03G081750' => 'ghi', 'Gohir.D04G098666' => 'ghi', 'Gohir.D08G051100' => 'ghi', 'Gohir.D11G116400' => 'ghi', 'Gohir.D11G208633' => 'ghi', 'Gohir.D12G049500' => 'ghi', 'Gohir.D13G093650' => 'ghi', 'Gohir.D13G130900' => 'ghi', 'Gorai.002G023500' => 'gra', 'Gorai.002G110800' => 'gra', 'Gorai.004G050800' => 'gra', 'Gorai.005G174400' => 'gra', 'Gorai.007G124600' => 'gra', 'Gorai.007G223700' => 'gra', 'Gorai.008G052400' => 'gra', 'Gorai.013G146900' => 'gra', 'GSVIVG01010068001' => 'vvi', 'GSVIVG01016308001' => 'vvi', 'GSVIVG01028084001' => 'vvi', 'GSVIVG01036683001' => 'vvi', 'GSVIVG01036685001' => 'vvi', 'HanXRQChr01g0000841' => 'han', 'HanXRQChr01g0001861' => 'han', 'HanXRQChr05g0137361' => 'han', 'HanXRQChr07g0190671' => 'han', 'HanXRQChr10g0278911' => 'han', 'HanXRQChr11g0335891' => 'han', 'HanXRQChr14g0438831' => 'han', 'Haze_00342' => 'cav', 'Haze_05009' => 'cav', 'Haze_05176' => 'cav', 'Haze_18446' => 'cav', 'Haze_26832' => 'cav', 'Haze_27098' => 'cav', 'Hma1.2p1_0042F.1_g025460' => 'hma', 'Hma1.2p1_0405F.1_g145565' => 'hma', 'Hma1.2p1_0451F.1_g155765' => 'hma', 'Hma1.2p1_1302F.1_g274330' => 'hma', 'Hma1.2p1_1417F.1_g282180' => 'hma', 'Hma1.2p1_1417F.1_g282190' => 'hma', 'Hma1.2p1_1417F.1_g282200' => 'hma', 'Hma1.2p1_1866F.1_g305833' => 'hma', 'Hma1.2p1_2406F.1_g321475' => 'hma', 'HPP92_003446' => 'vpl', 'HPP92_003995' => 'vpl', 'HPP92_006291' => 'vpl', 'HPP92_006292' => 'vpl', 'HPP92_006317' => 'vpl', 'HPP92_006319' => 'vpl', 'HPP92_008228' => 'vpl', 'HPP92_009940' => 'vpl', 'HPP92_021756' => 'vpl', 'HPP92_021757' => 'vpl', 'HPP92_023233' => 'vpl', 'HPP92_023275' => 'vpl', 'HPP92_023276' => 'vpl', 'HPP92_024147' => 'vpl', 'HPP92_024148' => 'vpl', 'HPP92_024198' => 'vpl', 'HPP92_024225' => 'vpl', 'HPP92_026769' => 'vpl', 'HPP92_027848' => 'vpl', 'Hund02821' => 'sun', 'Hund02931' => 'sun', 'Hund03214' => 'sun', 'Hund09496' => 'sun', 'Lalb_Chr01g0007271' => 'lal', 'Lalb_Chr01g0015671' => 'lal', 'Lalb_Chr01g0015681' => 'lal', 'Lalb_Chr02g0146661' => 'lal', 'Lalb_Chr02g0146671' => 'lal', 'Lalb_Chr05g0229051' => 'lal', 'Lalb_Chr06g0166621' => 'lal', 'Lalb_Chr09g0334581' => 'lal', 'Lalb_Chr09g0334591' => 'lal', 'Lalb_Chr20g0108281' => 'lal', 'Lalb_Chr25g0284031' => 'lal', 'Lalb_Chr25g0284041' => 'lal', 'Lj1A1154T38' => 'lonja', 'Lj1C20G4' => 'lonja', 'Lj2C339G6' => 'lonja', 'Lj3g0003356' => 'lja', 'Lj3g0019438' => 'lja', 'Lj3g0022291' => 'lja', 'Lj4g0025021' => 'lja', 'Lj5g0004240' => 'lja', 'Lj8A190G37' => 'lonja', 'Lsat_1_v5_gn_2_59481' => 'lsa', 'Lsat_1_v5_gn_2_66041' => 'lsa', 'Lsat_1_v5_gn_3_103521' => 'lsa', 'Lsat_1_v5_gn_3_122221' => 'lsa', 'Lsat_1_v5_gn_3_140860' => 'lsa', 'Lsat_1_v5_gn_5_171580' => 'lsa', 'Lsat_1_v5_gn_6_45900' => 'lsa', 'Lsat_1_v5_gn_6_57460' => 'lsa', 'Lsat_1_v5_gn_7_111041' => 'lsa', 'Manes.01G225700' => 'mes', 'Manes.03G076150' => 'mes', 'Manes.03G076300' => 'mes', 'Manes.03G076400' => 'mes', 'Manes.05G001700' => 'mes', 'Manes.16G055100' => 'mes', 'Manes.16G061200' => 'mes', 'Mapoly0025s0137' => 'mpo', 'Mapoly0035s0030' => 'mpo', 'Mapoly0066s0022' => 'mpo', 'Mapoly0094s0070' => 'mpo', 'MBI08_g43677_MAGBIO' => 'mbi', 'MBI08_g43678_MAGBIO' => 'mbi', 'MBI10_g30430_MAGBIO' => 'mbi', 'MBI18_g24948_MAGBIO' => 'mbi', 'MBI18_g25769_MAGBIO' => 'mbi', 'MBI18_g25770_MAGBIO' => 'mbi', 'MBI18_g39257_MAGBIO' => 'mbi', 'MBI18_g45606_MAGBIO' => 'mbi', 'MCO01G579' => 'mco', 'MCO13G518' => 'mco', 'MD00G1085100' => 'mdo', 'MD03G1297300' => 'mdo', 'MD10G1219800' => 'mdo', 'MD10G1219900' => 'mdo', 'MD10G1220200' => 'mdo', 'MD10G1220300' => 'mdo', 'MD10G1220400' => 'mdo', 'MD10G1220500' => 'mdo', 'MD10G1221000' => 'mdo', 'MD11G1317100' => 'mdo', 'MD13G1111200' => 'mdo', 'Medtr1g057830' => 'mtr', 'Medtr1g087440' => 'mtr', 'Medtr2g062770' => 'mtr', 'Medtr2g062790' => 'mtr', 'Medtr8g070540' => 'mtr', 'Medtr8g446910' => 'mtr', 'MELO3C006993.2' => 'cme', 'MELO3C012572.2' => 'cme', 'MELO3C015940.2' => 'cme', 'MELO3C019602.2' => 'cme', 'Migut.D00100' => 'egut', 'Migut.H01645' => 'egut', 'Migut.M02038' => 'egut', 'MSTRG.16383' => 'ama', 'MSTRG.21670' => 'ama', 'MSTRG.4281' => 'ama', 'Nitab4.5_0000075g0010' => 'nta', 'Nitab4.5_0000116g0060' => 'nta', 'Nitab4.5_0000388g0010' => 'nta', 'Nitab4.5_0001661g0010' => 'nta', 'Nitab4.5_0001815g0070' => 'nta', 'Nitab4.5_0001815g0080' => 'nta', 'Nitab4.5_0001994g0010' => 'nta', 'Nitab4.5_0001995g0030' => 'nta', 'Nitab4.5_0002828g0060' => 'nta', 'Nitab4.5_0008750g0020' => 'nta', 'Nitab4.5_0011717g0020' => 'nta', 'Nitab4.5_0016570g0010' => 'nta', 'Nitab4.5_0018051g0010' => 'nta', 'Nitab4.5_0024636g0010' => 'nta', 'Nn4g25657' => 'nnu', 'Nn4g26671' => 'nnu', 'Nn7g38429' => 'nnu', 'Nn7g38430' => 'nnu', 'Oeu005611.1' => 'oeu', 'Oeu006466.1' => 'oeu', 'Oeu008738.1' => 'oeu', 'Oeu016924.1' => 'oeu', 'Oeu017915.1' => 'oeu', 'Oeu040815.1' => 'oeu', 'Oeu046911.2' => 'oeu', 'Os01g0218700' => 'osa', 'Os01g0616900' => 'osa', 'Os01g0654100' => 'osa', 'Os05g0569700' => 'osa', 'Os05g0570400' => 'osa', 'Os05g0573300' => 'osa', 'Os12g0556600' => 'osa', 'Peaxi162Scf00001g02516' => 'pax', 'Peaxi162Scf00005g00229' => 'pax', 'Peaxi162Scf00006g02411' => 'pax', 'PGR042G0724' => 'pgr', 'PGR042G2500' => 'pgr', 'PGR044G0201' => 'pgr', 'PGSC0003DMG400009031' => 'stu', 'PGSC0003DMG400010436' => 'stu', 'PGSC0003DMG400013634' => 'stu', 'PGSC0003DMG400021499' => 'stu', 'PGSC0003DMG401009662' => 'stu', 'PGSC0003DMG404009662' => 'stu', 'Phvul.003G274700' => 'pvu', 'Phvul.005G044300' => 'pvu', 'Phvul.005G044400' => 'pvu', 'Phvul.005G044500' => 'pvu', 'Phvul.007G216100' => 'pvu', 'Phvul.011G180900' => 'pvu', 'Potri.001G073100' => 'ptr', 'Potri.003G157900' => 'ptr', 'Potri.008G080100' => 'ptr', 'Potri.010G176400' => 'ptr', 'Potri.010G176500' => 'ptr', 'Potri.014G123200' => 'ptr', 'Pp3c12_20560' => 'ppa', 'Pp3c13_18710' => 'ppa', 'Pp3c14_11150' => 'ppa', 'Pp3c2_10620' => 'ppa', 'Pp3c3_13060' => 'ppa', 'Pp3c5_21800' => 'ppa', 'Pp3c6_11470' => 'ppa', 'PRCOL_00001508' => 'pco', 'PRCOL_00001722' => 'pco', 'PRCOL_00001935' => 'pco', 'PRCOL_00006136' => 'pco', 'Prupe.2G069100' => 'ppe', 'Prupe.4G123500' => 'ppe', 'Prupe.4G123800' => 'ppe', 'Prupe.4G123900' => 'ppe', 'Prupe.5G033800' => 'ppe', 'Prupe.5G049900' => 'ppe', 'Prupe.8G269700' => 'ppe', 'Psat1g130560' => 'psa', 'Psat1g131040' => 'psa', 'Psat3g106000' => 'psa', 'Psat3g106120' => 'psa', 'Psat3g193720' => 'psa', 'Psat4g111640' => 'psa', 'Psat4g185840' => 'psa', 'Psat6g163400' => 'psa', 'Psat7g094120' => 'psa', 'PSO210G0097' => 'pso', 'PSO541G0787' => 'pso', 'PSO541G4061' => 'pso', 'PSO675G2338' => 'pso', 'PSO675G7707' => 'pso', 'PSO761G0122' => 'pso', 'PSO761G0642' => 'pso', 'QL04p096609' => 'qlo', 'QL04p096619' => 'qlo', 'QL11p010275' => 'qlo', 'QL11p010540' => 'qlo', 'QL11p010550' => 'qlo', 'QL12p028956' => 'qlo', 'RcHm_v2.0_Chr1g0347801' => 'rch', 'RcHm_v2.0_Chr2g0156931' => 'rch', 'RcHm_v2.0_Chr2g0171001' => 'rch', 'RcHm_v2.0_Chr5g0022491' => 'rch', 'RcHm_v2.0_Chr5g0022521' => 'rch', 'RcHm_v2.0_Chr5g0022531' => 'rch', 'RcHm_v2.0_Chr5g0022561' => 'rch', 'RcHm_v2.0_Chr5g0022571' => 'rch', 'RcHm_v2.0_Chr5g0022721' => 'rch', 'RcHm_v2.0_Chr7g0241901' => 'rch', 'Rhsim04G0003900' => 'rsi', 'Rhsim13G0137100' => 'rsi', 'Sabra01G0051600' => 'sbr', 'Sabra03G0114500' => 'sbr', 'Sabra08G0059700' => 'sbr', 'Sabra10G0135700' => 'sbr', 'Sabra14G0091600' => 'sbr', 'SalBow8G0315' => 'sbo', 'SalBow8G2375' => 'sbo', 'Sc02g0002940' => 'sci', 'Sc05g0000560' => 'sci', 'Sc05g0001470' => 'sci', 'Sc24g0003330' => 'sci', 'Sed0019803' => 'sed', 'Sed0021067' => 'sed', 'Sed0027010' => 'sed', 'Sed0027118' => 'sed', 'SEGI_02911' => 'sgi', 'SEGI_12730' => 'sgi', 'SEGI_21755' => 'sgi', 'SEGI_28941' => 'sgi', 'SGA_v2.0_scaffold239G43992' => 'sas', 'SGA_v2.0_scaffold334G49054' => 'sas', 'SGA_v2.0_scaffold423G51449' => 'sas', 'SGA_v2.0_scaffold48G18055' => 'sas', 'SHI33390' => 'shi', 'SMO117G0099' => 'smo', 'SMO137G0025' => 'smo', 'SMO165G0150' => 'smo', 'SMO174G0196' => 'smo', 'SMO268G0012' => 'smo', 'SMO268G0022' => 'smo', 'SMO272G0015' => 'smo', 'SMO296G0002' => 'smo', 'SMO296G0015' => 'smo', 'SMO308G0071' => 'smo', 'SMO347G0629' => 'smo', 'SMO361G0694' => 'smo', 'SMO361G0711' => 'smo', 'Solyc01g056850.3' => 'sly', 'Solyc01g079650.3' => 'sly', 'Solyc01g098530.3' => 'sly', 'Solyc02g082190.3' => 'sly', 'Solyc02g084300.1' => 'sly', 'Solyc02g088940.3' => 'sly', 'Solyc02g090040.2' => 'sly', 'Solyc12g017420.2' => 'sly', 'Sopen01g025830' => 'spe', 'Sopen01g031430' => 'spe', 'Sopen01g042080' => 'spe', 'Sopen01g052830' => 'spe', 'Sopen02g026850' => 'spe', 'Sopen02g033630' => 'spe', 'Sopen02g033690' => 'spe', 'Sopen02g033700' => 'spe', 'Sopen12g008200' => 'spe', 'Sp1g26710' => 'spa', 'Sp1g41890' => 'spa', 'Sp3g10820' => 'spa', 'Sp4g17170' => 'spa', 'Sp6g02020' => 'spa', 'Sp7g18660' => 'spa', 'TAR624G0626' => 'tar', 'TAR624G0750' => 'tar', 'TAR626G1874' => 'tar', 'TAR636G1726' => 'tar', 'THA.LOC104811981' => 'tha', 'THA.LOC104812695' => 'tha', 'THA.LOC104814334' => 'tha', 'THA.LOC104815715' => 'tha', 'THA.LOC104815924' => 'tha', 'THA.LOC104816140' => 'tha', 'THA.LOC104825947' => 'tha', 'THA.LOC104826408' => 'tha', 'Thecc.01G310100' => 'tca', 'Thecc.02G000200' => 'tca', 'Thecc.07G192400' => 'tca', 'Thecc.07G192500' => 'tca', 'Thhalv10007135m.g' => 'esa', 'Thhalv10011270m.g' => 'esa', 'Thhalv10016409m.g' => 'esa', 'Thhalv10020355m.g' => 'esa', 'Thhalv10024728m.g' => 'esa', 'Thhalv10028554m.g' => 'esa', 'TPR.G10958' => 'tpr', 'TPR.G19777' => 'tpr', 'TPR.G30144' => 'tpr', 'TPR.G3603' => 'tpr', 'TPR.G3637' => 'tpr', 'TPR.G39752' => 'tpr', 'TPR.G6126' => 'tpr', 'TWI18G0219' => 'twi', 'TWI36G0358' => 'twi', 'TWI38G1522' => 'twi', 'TWI59G0187' => 'twi', 'TWI63G0565' => 'twi', 'unitig_32.g11069' => 'ugi', 'unitig_85.g27176' => 'ugi', 'unitig_90.g27434' => 'ugi', 'vmacro02414' => 'vma', 'vmacro03579' => 'vma', 'vmacro09758' => 'vma', 'vmacro10629' => 'vma', 'VMungo0647G0762' => 'vmu', 'VMungo0647G1160' => 'vmu', 'VMungo0720G3122' => 'vmu', 'VMungo1080G1760' => 'vmu', 'VMungo1127G0490' => 'vmu', 'Zm00001eb137100' => 'zma', 'Zm00001eb158100' => 'zma', 'Zm00001eb162140' => 'zma', 'Zm00001eb296480' => 'zma', 'Zm00001eb338660' => 'zma', 'Zm00001eb344260' => 'zma', 'Zm00001eb358270' => 'zma', 'Zm00001eb359410' => 'zma' ) $gf_id = 'HOM05D000936' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000936' ) $data_identifier = 'HOM05D000936' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 7, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 3, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 19, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 3, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 10, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 4, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 13, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359410' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1